Respiratory Virus (Unspecified) Identification (Primary Care)
- Coding system
- SNOMED CT
- Coding system release
- 37.2.0
- Organisation
- OpenSAFELY
- Codelist ID
- opensafely/respiratory-virus-unspecified-identification-primary-care
- Version ID
- 662b7b70
Versions
- 662b7b70
Description
Codelist for identifying repsiratory infections in primary care which have no identified pathogen. For additional case identification, the SNOMED codes for LRTI (50417007) or UTRI (54150009) can be used to identify cases in emergency care (ECDS). For additional case identification in older adults, the SNOMED codes for COPD diagnosis code (195951007) can be used to identify cases in emergency care (ECDS).
Methodology
Codelist checked by Jennifer Quint. To see full outcome phenotypes see Github issue in references
References
Signed off by
- Em Prestige, (Aug. 14, 2024)
Codelists are developed by a broad community of users for individual study purposes, which may or may not meet the needs of other studies. They should not be thought of as universal definitions of a particular condition.
We don't offer any guarantees about what they do or don't identify. Users should carefully check that any codelist meets their needs, and seek clinical input where appropriate.
| code | term |
|---|---|
| 102453009 | Peritonsillar cellulitis |
| 10351008 | Suppurative tonsillitis |
| 10509002 | Acute bronchitis |
| 10625751000119106 | Bronchopneumonia due to virus |
| 10809006 | Parainfluenza virus laryngotracheitis |
| 1092361000119109 | Rubella pneumonia |
| 111274000 | Acute abscess of nasal sinus |
| 11134001 | Acute suppuration of sphenoidal sinus |
| 111849006 | Adenoviral bronchitis |
| 117723004 | Infectious bronchitis virus genotype determination |
| 1187256004 | Viral pneumonia due to infectious mononucleosis caused by human herpesvirus 4 |
| 122403008 | Infectious bronchitis virus culture |
| 123587001 | Acute bronchopneumonia |
| 123588006 | Confluent bronchopneumonia with abscess formation |
| 123590007 | Focal pneumonia |
| 123591006 | Confluent pneumonia |
| 123592004 | Acute mucous pneumonia |
| 128711000119106 | Pneumonia caused by methicillin susceptible Staphylococcus aureus |
| 129451001 | Respiratory bronchiolitis associated interstitial lung disease |
| 13266007 | Sphenoidal sinusitis |
| 133171000119105 | Chronic pharyngolaryngitis |
| 13617004 | Tracheobronchitis |
| 14465002 | Ulcerative tonsillitis |
| 14969004 | Catarrhal laryngitis |
| 155498004 | Acute sinusitis |
| 155499007 | Acute maxillary sinusitis |
| 155500003 | Acute frontal sinusitis |
| 155501004 | (Acute sinusitis: [NOS] or [ethmoidal] or [sphenoidal]) or ([pansinusitis]) |
| 155503001 | Acute tonsillitis |
| 155505008 | Acute laryngitis and tracheitis |
| 155506009 | Acute laryngitis |
| 155510007 | Acute laryngotracheobronchitis |
| 155512004 | Acute: [bronchitis] or [chest infections] or [tracheobronchitis] |
| 155515002 | Acute bronchitis NOS |
| 155549005 | Viral pneumonia |
| 155551009 | Bronchopneumonia |
| 155552002 | Pneumonia NOS |
| 155558003 | Pneumonia NOS |
| 155616009 | Bronchitis NOS |
| 15805002 | Acute sinusitis |
| 16146001 | Viral bronchitis |
| 17357005 | Acute suppuration of frontal sinus |
| 17741008 | Acute tonsillitis |
| 17904003 | Hypertrophic laryngitis |
| 18643000 | Ethmoidal sinusitis |
| 195649005 | Sinusitis (& acute) |
| 195651009 | Other acute sinusitis |
| 195652002 | Other acute sinusitis NOS |
| 195653007 | Acute sinusitis NOS |
| 195665006 | Tonsillitis (& acute) |
| 195666007 | Acute erythematous tonsillitis |
| 195667003 | Acute follicular tonsillitis |
| 195668008 | Acute ulcerative tonsillitis |
| 195669000 | Acute catarrhal tonsillitis |
| 195670004 | Acute gangrenous tonsillitis |
| 195676005 | Acute viral tonsillitis |
| 195677001 | Recurrent acute tonsillitis |
| 195678006 | Acute tonsillitis NOS |
| 195679003 | Acute laryngitis and tracheitis |
| 195680000 | Acute edematous laryngitis |
| 195681001 | Acute ulcerative laryngitis |
| 195682008 | Acute catarrhal laryngitis |
| 195683003 | Acute phlegmonous laryngitis |
| 195684009 | Acute laryngitis caused by Haemophilus influenzae |
| 195685005 | Acute pneumococcal laryngitis |
| 195686006 | Acute suppurative laryngitis |
| 195688007 | Acute viral laryngitis unspecified |
| 195690008 | Acute laryngitis NOS |
| 195702002 | Acute laryngotracheobronchitis |
| 195703007 | Acute laryngitis and tracheitis NOS |
| 195709006 | Pharyngolaryngitis |
| 195713004 | Acute bronchitis (& wheezy) |
| 195714005 | Acute fibrinous bronchitis |
| 195715006 | Acute membranous bronchitis |
| 195717003 | Acute purulent bronchitis |
| 195718008 | Acute croupous bronchitis |
| 195730002 | Subacute bronchitis unspecified |
| 195731003 | Acute viral bronchitis unspecified |
| 195733000 | Acute bronchitis NOS |
| 195790000 | Pansinusitis |
| 195803003 | Caseous tonsillitis |
| 195804009 | Lingular tonsillitis |
| 195810009 | Chronic laryngitis and laryngotracheitis |
| 195811008 | Chronic simple laryngitis |
| 195812001 | Chronic catarrhal laryngitis |
| 195813006 | Chronic hyperplastic laryngitis |
| 195880002 | Viral pneumonia (& chest infection) |
| 195882005 | Viral pneumonia NEC |
| 195883000 | Viral pneumonia NOS |
| 195899006 | (Pneumonia) or (chest infection) with infectious diseases EC |
| 195907003 | Pneumonia with other infectious diseases EC |
| 195912002 | Pneumonia with other infectious diseases EC NOS |
| 195913007 | Pneumonia with infectious diseases EC NOS |
| 195914001 | Bronchopneumonia: [unspecified organism] or [chest infection - unspecified] |
| 195915000 | Pneumonia due to unspecified organism |
| 195916004 | Lobar pneumonia due to unspecified organism |
| 195918003 | Basal pneumonia due to unspecified organism |
| 195923003 | Influenza with laryngitis |
| 195932001 | Atypical pneumonia |
| 195936003 | Bronchitis: [unspecified (& chest infection)] or [recurrent wheezy] |
| 195937007 | Tracheobronchitis NOS |
| 195938002 | Laryngotracheobronchitis |
| 195940007 | Bronchitis NOS |
| 196112005 | Abscess of lung with pneumonia |
| 196196007 | [X]Other acute sinusitis |
| 196204006 | [X]Other viral pneumonia |
| 198691000000108 | Acute obstructive laryngitis |
| 214081000000107 | Acute obstructive laryngitis |
| 222008 | Acute epiglottitis with obstruction |
| 22754005 | Staphylococcal pneumonia |
| 22951000119104 | Spasmodic croup |
| 232390009 | Suppurative sinusitis with complications |
| 232426008 | Acute simple laryngitis |
| 232428009 | Acute membranous laryngitis |
| 232429001 | Acute subglottic laryngitis |
| 232432003 | Pediatric acute epiglottitis and supraglottitis |
| 232433008 | Adult acute epiglottitis and supraglottitis |
| 233597004 | Chest infection - unspecified bronchitis |
| 233601004 | Acute viral bronchitis |
| 233604007 | Pneumonia |
| 266337001 | Acute epiglottitis (non-streptococcal) |
| 266350000 | Pneumococcal lobar pneumonia |
| 266351001 | Pneumonia with infectious diseases EC |
| 266352008 | Bronchopneumonia due to unspecified organism |
| 266354009 | Bronchitis unspecified |
| 266378004 | (Acute sinusitis: [NOS] or [ethmoidal] or [sphenoidal]) or ([pansinusitis]) |
| 266380005 | Acute: [bronchitis] or [chest infections] or [tracheobronchitis] |
| 26650005 | Acute tracheitis |
| 274103002 | Pneumonia NOS |
| 275483004 | Sinusitis |
| 275484005 | Maxillary sinusitis |
| 275485006 | Frontal sinusitis |
| 275499005 | Acute wheezy bronchitis |
| 276443001 | Acute laryngitis and/or tracheitis |
| 278516003 | Lobar pneumonia |
| 29591002 | Purulent bronchitis |
| 29608009 | Acute epiglottitis |
| 29951006 | Chronic laryngitis |
| 300999006 | Basal pneumonia |
| 301000005 | Left lower zone pneumonia |
| 301001009 | Right lower zone pneumonia |
| 301002002 | Left upper zone pneumonia |
| 301003007 | Right middle zone pneumonia |
| 301004001 | Right upper zone pneumonia |
| 301824001 | Acute viral laryngotracheitis |
| 30239003 | Acute abscess of sphenoidal sinus |
| 302911003 | Acute lingual tonsillitis |
| 307500008 | Cricoarytenoid joint arthritis |
| 307763005 | Basal pneumonia due to unspecified organism |
| 308906005 | Secondary bacterial pneumonia |
| 312342009 | Infective pneumonia |
| 312371005 | Acute infective bronchitis |
| 312400008 | Acute infective tracheobronchitis |
| 312423006 | Infective laryngitis |
| 312424000 | Infective tonsillitis |
| 313281000000109 | Acute rhinosinusitis |
| 32398004 | Bronchitis |
| 338111000000109 | Acute rhinosinusitis |
| 34020007 | Pneumonia caused by Streptococcus |
| 35301006 | Acute tracheobronchitis |
| 35339003 | Primary pneumonic plague |
| 36426008 | Subacute bronchitis |
| 36971009 | Sinusitis |
| 371127003 | Obstructive sinusitis |
| 37426002 | Ulcerative laryngitis |
| 37948003 | Acute laryngotracheitis without obstruction |
| 396284006 | Lobular pneumonia |
| 396285007 | Bronchopneumonia |
| 396286008 | Bilateral bronchopneumonia |
| 407671000 | Bilateral pneumonia |
| 408669002 | Acute laryngitis with obstruction |
| 41931000119102 | Sinusitis co-occurrent with nasal polyps |
| 426696003 | Lingular pneumonia |
| 429381000000103 | [X]Other viral pneumonia |
| 430395005 | Pneumonia caused by Gram negative bacteria |
| 431231008 | Acute rhinosinusitis |
| 441551009 | Inflammation of larynx caused by virus |
| 441590008 | Pneumonia caused by Severe acute respiratory syndrome coronavirus |
| 444814009 | Viral sinusitis |
| 445096001 | Pneumonia caused by Human metapneumovirus |
| 454211000000100 | [X]Other acute sinusitis |
| 45913009 | Laryngitis |
| 51209006 | Viral tonsillitis |
| 532291000000105 | Pneumonia with infectious diseases EC |
| 55130001 | Laryngotracheitis |
| 55355000 | Acute laryngopharyngitis |
| 55679008 | Peribronchial pneumonia |
| 576581000000107 | Acute viral laryngitis unspecified |
| 57702005 | Unresolved pneumonia |
| 5875001 | Acute bronchitis with obstruction |
| 59967003 | Acute laryngotracheitis with obstruction |
| 600981000000100 | Other acute sinusitis NOS |
| 600991000000103 | Acute sinusitis NOS |
| 603091000000105 | Acute laryngitis NOS |
| 603111000000100 | Pneumonia with other infectious diseases EC |
| 603131000000108 | Acute laryngitis and tracheitis NOS |
| 60363000 | Pneumonia |
| 60485005 | Pleurobronchopneumonia |
| 607911000000108 | Other acute sinusitis |
| 616111000000105 | Pneumonia with other infectious diseases EC NOS |
| 616131000000102 | Pneumonia with infectious diseases EC NOS |
| 616141000000106 | Pneumonia due to unspecified organism |
| 617941000000107 | Viral pneumonia NEC |
| 617951000000105 | Viral pneumonia NOS |
| 617981000000104 | Bacterial pneumonia NOS |
| 621011000000106 | Acute bronchitis NOS |
| 623471000000106 | Acute tonsillitis NOS |
| 63140003 | Acute suppuration of ethmoidal sinus |
| 64369009 | Acute tracheitis without obstruction |
| 64375000 | Acute laryngotracheitis |
| 644261000000103 | Chest infection - unspecified bronchitis |
| 64703005 | Terminal bronchopneumonia |
| 649111000000109 | Tracheobronchitis NOS |
| 649121000000103 | Bronchitis NOS |
| 64917006 | Parainfluenza virus pneumonia |
| 651931000000103 | Subacute bronchitis unspecified |
| 651941000000107 | Acute viral bronchitis unspecified |
| 652331000000107 | Basal pneumonia due to unspecified organism |
| 656891000000102 | Lobar pneumonia due to unspecified organism |
| 65878001 | Septic bronchitis |
| 66429007 | Unresolved lobar pneumonia |
| 6655004 | Acute laryngitis |
| 670561000000106 | Bronchitis unspecified |
| 677801000000109 | Pneumonia NOS |
| 67814005 | Bronchopneumonia |
| 67832005 | Acute ethmoidal sinusitis |
| 68272006 | Acute maxillary sinusitis |
| 689401000000108 | Bronchopneumonia due to unspecified organism |
| 699014000 | Recurrent pneumonia |
| 709663002 | Supraglottitis |
| 70976000 | Viral epiglottitis |
| 71186008 | Croup |
| 713084008 | Pneumonia caused by Human coronavirus |
| 714203003 | Acute bronchitis co-occurrent with bronchiectasis |
| 721586007 | Pharyngotonsillitis caused by Human herpes simplex virus |
| 725917007 | Acute sinusitis caused by virus |
| 75570004 | Viral pneumonia |
| 7678002 | Cytomegaloviral pneumonia |
| 77919000 | Acute sphenoidal sinusitis |
| 785728005 | Bronchitis co-occurrent with wheeze |
| 785737005 | Bronchitis co-occurrent with chronic wheeze |
| 785744001 | Bronchitis co-occurrent with acute wheeze |
| 785745000 | Acute bronchitis co-occurrent with wheeze |
| 78737005 | Frontal sinusitis |
| 80257001 | Acute bronchitis with bronchospasm |
| 80384002 | Epiglottitis |
| 80600003 | Acute suppuration of nasal sinus |
| 80771000000105 | Atypical pneumonia screening test |
| 82690000 | Suppurative laryngitis |
| 83271005 | Chronic laryngotracheitis |
| 84753008 | Pneumonia in systemic mycosis |
| 85083002 | Streptococcal laryngitis |
| 8519009 | Acute tracheitis with obstruction |
| 85832003 | Parainfluenza virus laryngitis |
| 85915003 | Laryngotracheobronchitis |
| 878818001 | Pharyngotonsillitis |
| 882784691000119100 | Pneumonia caused by severe acute respiratory syndrome coronavirus 2 |
| 88348008 | Maxillary sinusitis |
| 89194009 | Acute abscess of maxillary sinus |
| 89549007 | Catarrhal bronchitis |
| 897656009 | Rhinosinusitis |
| 90176007 | Tonsillitis |
| 91038008 | Acute frontal sinusitis |
Codes not in the full codelist are in faint grey.