RSV Identification (Primary Care) - Maximal Sensitivity



Coding system
SNOMED CT
Coding system release
37.2.0
Organisation
OpenSAFELY
Codelist ID
opensafely/rsv-identification-primary-care-maximal-sensitivity
Version ID
7c882eaf

Versions
  • 7c882eaf

Description

Codelist created to identify RSV in primary care with as much sensitivity as possible. For additional case identification in infants, the SNOMED codes for Bronchiolitis (4120002) and Viral Wheeze (276191000000107) can be used to identify cases in emergency care (ECDS).

Methodology

Codelist should be used in conjunction with RSV Identification (Primary Care), if a patient does not have a code within said list, they must have 2 codes from the maximally sensitive codelist within two weeks of each other. They must not have any codes present in the exclusion list. Codelist checked by Jennifer Quint. To see full outcome phenotypes see Github issue in references

References

Signed off by

  • Em Prestige, (Aug. 14, 2024)

Codelists are developed by a broad community of users for individual study purposes, which may or may not meet the needs of other studies. They should not be thought of as universal definitions of a particular condition.

We don't offer any guarantees about what they do or don't identify. Users should carefully check that any codelist meets their needs, and seek clinical input where appropriate.

code term
1008061000000102 Respiratory syncytial virus ribonucleic acid detection assay
1014391000000101 Respiratory syncytial virus antigen level
10151000132103 Fever caused by virus
1018471000000102 Respiratory syncytial virus antigen assay
102496004 Spiking fever
103001002 Feeling feverish
1030271000000105 Respiratory syncytial virus nucleic acid detection assay
1036671000000106 Severe sepsis
105592009 Septicemia
10625551000119103 Bronchopneumonia caused by respiratory syncytial virus
1076281000000108 Amber flag sepsis
1092461000119104 Sepsis without acute organ dysfunction
11140008 Respiratory assist, manual
1163073003 Encephalitis caused by human respiratory syncytial virus
117089007 Administration of Respiratory Syncytial virus immune globulin, human
117090003 Intravenous infusion of Respiratory syncytial virus immune globulin, human
117956005 Bovine respiratory syncytial virus antigen assay
11833005 Dry cough
122233003 Respiratory syncytial virus antigen assay
122274003 Respiratory syncytial virus culture
12529006 Expiratory crackles
129451001 Respiratory bronchiolitis associated interstitial lung disease
13320001000004109 Human respiratory syncytial virus isolated in sputum by culture
135882008 Feverish cold
135883003 Cough with fever
139108003 Feels hot/feverish
139109006 Fever with sweating
139176003 (Cough (& [symptom])) or (sputum - symptom)
139179005 Dry cough
139180008 Productive cough -clear sputum
139181007 Productive cough -green sputum
139182000 Productive cough-yellow sputum
139183005 Productive cough NOS
139186002 Chesty cough
139189009 Unexplained cough
139190000 Cough symptom NOS
139200001 Difficulty breathing
141478007 Fever: [examination of] or [O/E]
141479004 O/E - fever - general
141483004 O/E - fever - general NOS
141493006 O/E - level of fever
141499005 O/E - level of fever NOS
141500001 O/E - character of fever
141502009 O/E - fever - acute rise
141503004 O/E - fever - gradual rise
141504005 O/E - fever - continuous
141505006 O/E - fever - remittent
141506007 O/E - fever - intermittent
141507003 O/E - staircase fever
141508008 O/E - fever - irregular
141509000 O/E - fever - fast fall-crisis
141510005 O/E - fever-gradual fall-lysis
141511009 O/E - fever character NOS
141512002 O/E - fever NOS
143587007 RSV antigen level
1532007 Viral pharyngitis
154313001 Septicaemia
154372003 Viral infection NOS
155497009 (Acute nasopharyngitis) or (common cold) or (acute coryza) or (acute rhinitis) or (sniffles) or (snuffles)
155513009 Acute bronchiolitis
158163006 [D]Chills with fever
158166003 [D]Fever NEC
158329004 [D]Mouth breathing
158383001 [D]Cough
158385008 [D]Cough with haemorrhage
16146001 Viral bronchitis
161850008 [Temperature] or [fever] or [pyrexia] symptoms
161852000 Feels hot/feverish
161853005 Fever with sweating
161921002 (Cough (& [symptom])) or (sputum - symptom)
161923004 Productive cough -clear sputum
161924005 Productive cough -green sputum
161925006 Productive cough-yellow sputum
161926007 (Coughing up phlegm) or (productive cough NOS)
161927003 Night cough present
161929000 Chesty cough
161932002 Morning cough
161933007 Evening cough
161934001 Unexplained cough
161935000 Cough symptom NOS
161945003 Difficulty breathing
161947006 Nocturnal cough / wheeze
162481009 Breathing aggravates symptom
162896002 On examination - stertorous breathing
162900004 On examination - air hunger
162913005 On examination - rate of respiration
162915003 On examination - rate of respiration slow
162916002 On examination - tachypnea
162920003 On examination - shallow breathing
164284002 Fever: [examination of] or [O/E]
164285001 On examination - fever - general
164287009 On examination - fever examination - no abnormality detected
164288004 On examination - pyrexia of unknown origin
164289007 On examination - fever - general NOS
164301009 On examination - temperature low
164304001 On examination - hyperpyrexia - greater than 40.5 degrees Celsius
164306004 On examination - character of fever
164307008 On examination - fever - acute rise
164308003 On examination - fever - gradual rise
164309006 On examination - fever - continuous
164311002 On examination - fever - remittent
164312009 On examination - fever - intermittent
164313004 On examination - staircase fever
164314005 On examination - fever - irregular
164315006 On examination - fever - fast fall-crisis
164316007 On examination - fever-gradual fall-lysis
164317003 On examination - fever character NOS
164318008 On examination - fever NOS
166223009 RSV antigen level
166771000000103 Respiratory syncytial virus serology
168501000000102 Respiratory syncytial virus serology
173081000000100 Respiratory syncytial virus serology
17361004 Tracheal breathing
17986004 Barking cough
18197001 Asthmatoid wheeze
186392004 (Septicaemia NOS) or (sepsis)
186694006 Sweating fever
186750007 Respiratory syncytial virus infection
186754003 Viral: [infection NOS] or [illness]
186760003 Respiratory syncytial virus as the cause of diseases classified to other chapters
186820006 Relapsing fever
186822003 Relapsing fever NOS
187332009 [X]Other specified septicemia
187333004 [X]Septicemia, unspecified
187341000000105 Respiratory syncytial virus antigen assay
187374004 [X]Relapsing fever, unspecified
187470009 [X]Other viral infections of unspecified site
187471008 [X]Viral infection, unspecified
187589007 Respiratory syncytial virus as the cause of diseases classified to other chapters
190781000000101 Respiratory syncytial virus antigen assay
195648002 (Acute nasopharyngitis or rhinitis) or (common cold)
195662009 Acute viral pharyngitis
195727009 Acute respiratory syncytial virus bronchitis
195736008 Acute bronchiolitis with bronchospasm
195739001 Acute bronchiolitis caused by respiratory syncytial virus
195741000 Acute bronchiolitis NOS
195881003 Pneumonia caused by respiratory syncytial virus
200151000000106 Reflux cough
204561000000109 Respiratory syncytial virus nucleic acid detection
20573003 Ineffective breathing pattern
206304007 Perinatal hemoptysis of fetus and/or neonate
206376005 Sepsis of the newborn
20670007 Brassy cough
206758001 [D]Pyrexia of unknown origin
206760004 [D]Chills with fever
206762007 [D]Fever NOS
206763002 [D]Persistent fever
206998007 [D]Mouth breathing
207066005 [D]Cough
207067001 [D]Cough syncope
207069003 [D]Cough with hemorrhage
207582004 [X]Other and unspecified abnormalities of breathing
209871000000104 RSV nucleic acid detection
209881000000102 RSV nucleic acid detection
221051000000108 Respiratory syncytial virus prevention drugs Band 1
221061000000106 Respiratory syncytial virus treatment and Hepatitis C treatment drugs Band 1
225575005 Unable to cough up sputum
225576006 Able to cough up sputum
225914005 Bubbling respiration
230361008 Sepsis-associated encephalopathy
232341009 Acute rhinitis
233602006 Acute viral bronchiolitis
233785003 Infectious disorder of trachea
233812001 Sepsis-associated lung injury
234173007 Hyperdynamic septic shock
234174001 Hypodynamic septic shock
238150007 Sepsis syndrome
238151006 Sepsis-associated organ dysfunction
238152004 Sepsis-related gastrointestinal ulceration
24612001 Wheeze - rhonchi
247410004 Painful cough
248425001 Pyrexia
248427009 Fever symptoms
248430002 Pattern of fever
248431003 Phase of fever
248432005 Rising phase of fever
248433000 Plateau phase of fever
248434006 Falling phase of fever
248435007 Prolonged fever
248436008 Slightly remittent fever
248443002 Intermittent hepatic fever
248444008 Biphasic fever
248445009 Fever, diurnal variation
248446005 Reversed diurnal fever
248449003 Central fever
248573009 Noisy respiration
248574003 Croupy breathing
248577005 Rattling breathing
248579008 Whistling respiration
248580006 Whistling in nose
248592006 Character of cough
248593001 Cough when swallowing
248615003 Large airway sounds
248616002 Increased vocal resonance
248617006 Decreased vocal resonance
248618001 Moist crackles
248619009 Bubbling crackles
248621004 Transmitted sounds
248622006 Respiratory clicking sound
248623001 Respiratory squawk
248624007 Respiratory squeak
263731006 Coughing
266089004 Septicemia NOS
266116004 Viral infection NOS
266377009 (Acute nasopharyngitis) or (common cold) or (acute coryza) or (acute rhinitis) or (sniffles) or (snuffles)
267034005 Productive cough NOS
268893004 [D]Fever NEC
268984004 Examination of fever
271621004 Stertorous breathing
271622006 Death rattle
271749004 Acute rise of fever
271750004 Gradual rise of fever
271751000 Continuous fever
271752007 Staircase fever
271753002 Irregular fever
271754008 Rapid fall of fever
271755009 Gradual fall of fever
271897009 On examination - fever
272039006 Complaining of cough
272040008 Wheezing symptom
273041000000105 Respiratory syncytial virus treatment and Hepatitis C treatment drugs band 1
273051000000108 Respiratory syncytial virus prevention drugs band 1
274308003 On examination - hyperpyrexia
274640006 Fever with chills
276741000 Sepsis-associated myocardial dysfunction
277357006 Sputum retention
277638005 Sepsis-associated left ventricular failure
277639002 Sepsis-associated right ventricular failure
281794004 Viral upper respiratory tract infection
284520004 Basal crepitations
284523002 Persistent cough
287121000000103 Barking cough
287131000000101 Barking cough
28743005 Productive cough
288849009 Unable to breathe
289097003 Unable to take deep breaths
289100008 Difficulty taking deep breaths
289102000 Unable to control breathing
289104004 Does not control breathing
289105003 Difficulty controlling breathing
289113002 Able to cough
289114008 Does cough
289115009 Does not cough
289116005 Difficulty coughing
289117001 Able to expectorate
289118006 Unable to expectorate
289120009 Does not expectorate
289121008 Difficulty expectorating
289965001 Croupy cough
297208002 Expiratory grunting
301235001 Finding of cough
301236000 Effective cough
301240009 Difficulty to clear sputum
301241008 Unable to clear sputum
301243006 Does not clear sputum
301244000 Ability to cough up sputum
301245004 Difficulty in coughing up sputum
301246003 Does cough up sputum
301247007 Does not cough up sputum
301282008 Finding of respiration
301287002 Expiratory stridor
301288007 Quiet respiration
301703002 Expiratory polyphonic wheeze
301708006 Chest clear
301826004 Intermittent stridor
304213008 Low grade pyrexia
306321000000105 Green traffic light - low risk of serious illness (Feverish illness in children 2007)
306331000000107 Green traffic light - low risk of serious illness (Feverish illness in young children 2007)
306341000000103 Green traffic light - low risk of serious illness (Feverish illness in young children 2007)
306779000 Ability to cough voluntarily
306780002 Able to cough voluntarily
306781003 Unable to cough voluntarily
306782005 Difficulty coughing voluntarily
307487006 Biphasic stridor
307631000000100 Amber traffic light - intermediate risk of serious illness (Feverish illness in children 2007)
307641000000109 Amber traffic light - intermediate risk of serious illness (Feverish illness in children 2007)
307651000000107 Amber traffic light - intermediate risk of serious illness (Feverish illness in children 2007)
307661000000105 Red traffic light - high risk of serious illness (Feverish illness in children 2007)
307671000000103 Red traffic light - high risk of serious illness (Feverish illness in children 2007)
307681000000101 Red traffic light - high risk of serious illness (Feverish illness in children 2007)
311000119101 Non-allergic rhinitis
312130009 Viral infection by site
312133006 Viral respiratory infection
312134000 Viral lower respiratory infection
31309002 Respiratory syncytial virus pharyngitis
313274005 Respiratory syncytial virus swab
314043005 Viral pleurisy
315184001 Respiratory syncytial virus antigen level
315246003 Unexplained cough
31572008 Inspiratory wheezing
31846006 Medium rales
320955005 Cough suppressants
32370002 Diprophylline
33778004 Bronchovesicular breath sounds
34014006 Viral disease
34050004 Respiratory syncytial virus pneumonia
34448000 Serologic test for respiratory syncytial virus
34770001 Atelectatic rales
34808003 Breathing problem
349991003 Compound cough suppressant
364054002 Characteristic of cough
365411000000103 Respiratory syncytial virus A detected
365421000000109 Respiratory syncytial virus A detected
365431000000106 Respiratory syncytial virus A detected
365441000000102 Respiratory syncytial virus B detected
365451000000104 Respiratory syncytial virus B detected
365461000000101 Respiratory syncytial virus B detected
365471000000108 Respiratory syncytial virus untyped strain detected
365481000000105 Respiratory syncytial virus untyped strain detected
365491000000107 Respiratory syncytial virus untyped strain detected
366946004 Feverish cold
366956000 Cough with fever
367171008 Feverish cold
367181007 Cough with fever
371044001 Transient respiratory distress with sepsis
373904004 Feels hot/feverish
373906002 Fever with sweating
386305005 Treatment of fever
386661006 Fever
386813002 Abnormal breathing
390757000 Respiratory syncytial virus antigen assay
396991000000105 [D]Fever NOS
398234006 Breathing system problem
400661000000104 [X]Other specified septicaemia
40428002 High-pitched rhonchi
408684006 Healthcare associated respiratory syncytial virus disease
408691009 Pleuritic breathing
409091000000109 [X]Other and unspecified abnormalities of breathing
409596002 Non-productive cough
409631000 Acute viral disease
409702008 Hyperpyrexia
4120002 Bronchiolitis
416088008 Bovine respiratory syncytial virus disease
416113008 Febrile disorder
417770000 Human respiratory syncytial virus Group A
417771001 Human respiratory syncytial virus Group B
417772008 Human respiratory syncytial virus GA1
417773003 Human respiratory syncytial virus GA2
417774009 Human respiratory syncytial virus GA3
417790009 Human respiratory syncytial virus GA4
417791008 Human respiratory syncytial virus GA5
417792001 Human respiratory syncytial virus GA6
417793006 Human respiratory syncytial virus GA7
417794000 Human respiratory syncytial virus GB1
417795004 Human respiratory syncytial virus GB2
417796003 Human respiratory syncytial virus GB3
417797007 Human respiratory syncytial virus GB4
417850002 Respiratory tract congestion and cough
420079008 Relapsing fever
42136008 Swinging fever
425696007 Manual respiratory assistance using bag and mask
426000000 Fever greater than 100.4 Fahrenheit
426976009 Pain provoked by breathing
428869006 Mixed rhinitis
43025008 Paroxysmal cough
430546009 Agonal respiration
431231008 Acute rhinosinusitis
440929004 Respiratory syncytial virus A present
441048007 Respiratory syncytial virus B present
441278007 Respiratory syncytial virus untyped strain present
441551009 Inflammation of larynx caused by virus
441761000000105 [X]Relapsing fever, unspecified
444814009 Viral sinusitis
445241004 Persistent cough after viral respiratory infection
447931005 Clinical sepsis
46107006 Relapsing fever
464581000000103 [X]Other viral infections of unspecified site
464591000000101 [X]Viral infection, unspecified
465301000000100 [D]Fever NEC
465311000000103 [X]Septicemia, unspecified
468191000000103 [D]Fever NEC
468246003 Aerosol face mask, rebreathing
468414000 Aerosol face mask, non-rebreathing
47525004 Coarse respiratory crackles
47653008 Harsh breath sounds
48348007 Normal breath sounds
48409008 Respiratory crackles
495721000000108 [D]Pyrexia of unknown origin
495731000000105 [D]Chills with fever
495741000000101 [D]Persistent fever
49727002 Cough
497541000000102 [D]Mouth breathing
49779001 Bovine respiratory syncytial virus
498061000000106 [D]Cough
498071000000104 [D]Cough syncope
498091000000100 [D]Cough with haemorrhage
51191000237106 Qualitative result of Respiratory syncytial virus antigen in nasal fluid
51701000237100 Qualitative result of human respiratory syncytial virus ribonucleic acid nucleic acid amplification
53541006 Low-pitched rhonchi
536861000000102 Cough symptom NOS
53972003 Added respiratory sounds
54514007 Bronchophony
5505005 Acute bronchiolitis
55735004 Respiratory syncytial virus infection
56018004 Wheezing
57089007 Respiratory syncytial virus bronchiolitis
571041000000100 On examination - fever - general NOS
571051000000102 On examination - level of fever NOS
582151000000103 On examination - fever NOS
58596002 Inspiratory stridor
58840004 Decreased breath sounds
593251000000102 Relapsing fever NOS
598631000000100 On examination - fever character NOS
59921000237106 Qualitative result of respiratory syncytial virus antigen in nasopharyngeal aspirate
59994004 Hacking cough
60025004 Transitory fever of newborn
615621000000101 Respiratory syncytial virus as the cause of diseases classified to other chapters
621031000000103 Acute bronchiolitis NOS
62731002 Increasing frequency of cough
63000007 Spasmodic cough
63642005 Superficial crackling rales
63993003 Remittent fever
6415009 Human respiratory syncytial virus
65503000 Absent breath sounds
65526007 Pleuropericardial friction rub
65949001 Increased breath sounds
66011008 Viral tracheitis
66857006 Hemoptysis
677011000000103 Productive cough NOS
67750007 Ineffective airway clearance
68095009 Wheezing stridor
691041000000103 Viral infection NOS
70076002 Rhinitis
701331000000100 Septicemia NOS
70407001 Stridor
707779003 Ribonucleic acid of Human respiratory syncytial virus A
707780000 Ribonucleic acid of Human respiratory syncytial virus B
707781001 Ribonucleic acid of Human respiratory syncytial virus
709251003 Antigen of Bovine respiratory syncytial virus
70976000 Viral epiglottitis
7142008 Cough at rest
718004 Acute bronchiolitis with obstruction
72204002 Respiratory syncytial virus laryngotracheobronchitis
722892007 Fever due to infection
75125004 Chills and fever
7520000 Pyrexia of unknown origin
75252003 Inspiratory crackles
75483001 Breathing painful
755581000000101 Mild wheeze
755591000000104 Moderate wheeze
755601000000105 Severe wheeze
755611000000107 Very severe wheeze
76571007 Septic shock
767467006 Respiratory syncytial virus immune globulin
769210005 Strength of cough
769211009 No cough strength
770349000 Sepsis caused by virus
77047003 Vesicular breathing
773117009 Laryngeal stridor
773551000000105 Fever care management
77957000 Intermittent fever
781651000000101 Respiratory bronchiolitis associated interstitial lung disease
789043007 Sepsis without septic shock
79451004 Bronchial breathing
79479005 Respiratory syncytial virus bronchitis
807861000000106 Respiratory bronchiolitis associated interstitial lung disease
80954004 Decreased respiratory function
821021000000105 Detection of respiratory syncytial virus ribonucleic acid by nucleic acid amplification test
82272006 Common cold
82399006 Audible inspiration
831561000000109 Sepsis
832361000000107 Sepsis
832371000000100 Sepsis
8442000 Purulent rhinitis
85377008 Post-tussive crackles
859701000000104 Suspected sepsis
862231000000103 Massive haemoptysis
867311000000104 Constant wheezing
867411000000108 Respiratory syncytial virus monoclonal antibody prophylaxis
876251000000103 Respiratory syncytial virus monoclonal antibody prophylaxis
897656009 Rhinosinusitis
908401000000100 Respiratory syncytial virus nucleic acid detection assay
908411000000103 RSV nucleic acid detection assay
91302008 Sepsis
926181000000107 Wheezing in absence of colds
935211000000102 Respiratory syncytial virus ribonucleic acid detection assay
935221000000108 Respiratory syncytial virus ribonucleic acid detection assay
95618001 Neonatal respiratory depression
95627000 Fever of newborn
957421000000104 Uncomplicated sepsis
957431000000102 Red flag sepsis
9763007 Expiratory wheezing

Codes not in the full codelist are in faint grey.