RSV Identification (Primary Care) - Maximal Sensitivity
Codelist metadata
-
Coding system
- SNOMED CT
-
Coding system release
- 37.2.0
-
Organisation
- OpenSAFELY
-
Codelist ID
- opensafely/rsv-identification-primary-care-maximal-sensitivity
-
Version ID
- 7c882eaf
Versions
About
Description
Codelist created to identify RSV in primary care with as much sensitivity as possible. For additional case identification in infants, the SNOMED codes for Bronchiolitis (4120002) and Viral Wheeze (276191000000107) can be used to identify cases in emergency care (ECDS).
Methodology
Codelist should be used in conjunction with RSV Identification (Primary Care), if a patient does not have a code within said list, they must have 2 codes from the maximally sensitive codelist within two weeks of each other. They must not have any codes present in the exclusion list. Codelist checked by Jennifer Quint. To see full outcome phenotypes see Github issue in references
References
- RSV Identification (Primary Care)
- RSV Identification (Prescriptions)
- RSV Exclusion Criteria (Primary Care)
- Outcome Phenotypes Github Issue
Signed off by
- Em Prestige, (Aug. 14, 2024)
Codelists are developed by a broad community of users for individual study purposes, which may or may not meet the needs of other studies. They should not be thought of as universal definitions of a particular condition.
We don't offer any guarantees about what they do or don't identify. Users should carefully check that any codelist meets their needs, and seek clinical input where appropriate.
code | term |
---|---|
1008061000000102 | Respiratory syncytial virus ribonucleic acid detection assay |
1014391000000101 | Respiratory syncytial virus antigen level |
10151000132103 | Fever caused by virus |
1018471000000102 | Respiratory syncytial virus antigen assay |
102496004 | Spiking fever |
103001002 | Feeling feverish |
1030271000000105 | Respiratory syncytial virus nucleic acid detection assay |
1036671000000106 | Severe sepsis |
105592009 | Septicemia |
10625551000119103 | Bronchopneumonia caused by respiratory syncytial virus |
1076281000000108 | Amber flag sepsis |
1092461000119104 | Sepsis without acute organ dysfunction |
11140008 | Respiratory assist, manual |
1163073003 | Encephalitis caused by human respiratory syncytial virus |
117089007 | Administration of Respiratory Syncytial virus immune globulin, human |
117090003 | Intravenous infusion of Respiratory syncytial virus immune globulin, human |
117956005 | Bovine respiratory syncytial virus antigen assay |
11833005 | Dry cough |
122233003 | Respiratory syncytial virus antigen assay |
122274003 | Respiratory syncytial virus culture |
12529006 | Expiratory crackles |
129451001 | Respiratory bronchiolitis associated interstitial lung disease |
13320001000004109 | Human respiratory syncytial virus isolated in sputum by culture |
135882008 | Feverish cold |
135883003 | Cough with fever |
139108003 | Feels hot/feverish |
139109006 | Fever with sweating |
139176003 | (Cough (& [symptom])) or (sputum - symptom) |
139179005 | Dry cough |
139180008 | Productive cough -clear sputum |
139181007 | Productive cough -green sputum |
139182000 | Productive cough-yellow sputum |
139183005 | Productive cough NOS |
139186002 | Chesty cough |
139189009 | Unexplained cough |
139190000 | Cough symptom NOS |
139200001 | Difficulty breathing |
141478007 | Fever: [examination of] or [O/E] |
141479004 | O/E - fever - general |
141483004 | O/E - fever - general NOS |
141493006 | O/E - level of fever |
141499005 | O/E - level of fever NOS |
141500001 | O/E - character of fever |
141502009 | O/E - fever - acute rise |
141503004 | O/E - fever - gradual rise |
141504005 | O/E - fever - continuous |
141505006 | O/E - fever - remittent |
141506007 | O/E - fever - intermittent |
141507003 | O/E - staircase fever |
141508008 | O/E - fever - irregular |
141509000 | O/E - fever - fast fall-crisis |
141510005 | O/E - fever-gradual fall-lysis |
141511009 | O/E - fever character NOS |
141512002 | O/E - fever NOS |
143587007 | RSV antigen level |
1532007 | Viral pharyngitis |
154313001 | Septicaemia |
154372003 | Viral infection NOS |
155497009 | (Acute nasopharyngitis) or (common cold) or (acute coryza) or (acute rhinitis) or (sniffles) or (snuffles) |
155513009 | Acute bronchiolitis |
158163006 | [D]Chills with fever |
158166003 | [D]Fever NEC |
158329004 | [D]Mouth breathing |
158383001 | [D]Cough |
158385008 | [D]Cough with haemorrhage |
16146001 | Viral bronchitis |
161850008 | [Temperature] or [fever] or [pyrexia] symptoms |
161852000 | Feels hot/feverish |
161853005 | Fever with sweating |
161921002 | (Cough (& [symptom])) or (sputum - symptom) |
161923004 | Productive cough -clear sputum |
161924005 | Productive cough -green sputum |
161925006 | Productive cough-yellow sputum |
161926007 | (Coughing up phlegm) or (productive cough NOS) |
161927003 | Night cough present |
161929000 | Chesty cough |
161932002 | Morning cough |
161933007 | Evening cough |
161934001 | Unexplained cough |
161935000 | Cough symptom NOS |
161945003 | Difficulty breathing |
161947006 | Nocturnal cough / wheeze |
162481009 | Breathing aggravates symptom |
162896002 | On examination - stertorous breathing |
162900004 | On examination - air hunger |
162913005 | On examination - rate of respiration |
162915003 | On examination - rate of respiration slow |
162916002 | On examination - tachypnea |
162920003 | On examination - shallow breathing |
164284002 | Fever: [examination of] or [O/E] |
164285001 | On examination - fever - general |
164287009 | On examination - fever examination - no abnormality detected |
164288004 | On examination - pyrexia of unknown origin |
164289007 | On examination - fever - general NOS |
164301009 | On examination - temperature low |
164304001 | On examination - hyperpyrexia - greater than 40.5 degrees Celsius |
164306004 | On examination - character of fever |
164307008 | On examination - fever - acute rise |
164308003 | On examination - fever - gradual rise |
164309006 | On examination - fever - continuous |
164311002 | On examination - fever - remittent |
164312009 | On examination - fever - intermittent |
164313004 | On examination - staircase fever |
164314005 | On examination - fever - irregular |
164315006 | On examination - fever - fast fall-crisis |
164316007 | On examination - fever-gradual fall-lysis |
164317003 | On examination - fever character NOS |
164318008 | On examination - fever NOS |
166223009 | RSV antigen level |
166771000000103 | Respiratory syncytial virus serology |
168501000000102 | Respiratory syncytial virus serology |
173081000000100 | Respiratory syncytial virus serology |
17361004 | Tracheal breathing |
17986004 | Barking cough |
18197001 | Asthmatoid wheeze |
186392004 | (Septicaemia NOS) or (sepsis) |
186694006 | Sweating fever |
186750007 | Respiratory syncytial virus infection |
186754003 | Viral: [infection NOS] or [illness] |
186760003 | Respiratory syncytial virus as the cause of diseases classified to other chapters |
186820006 | Relapsing fever |
186822003 | Relapsing fever NOS |
187332009 | [X]Other specified septicemia |
187333004 | [X]Septicemia, unspecified |
187341000000105 | Respiratory syncytial virus antigen assay |
187374004 | [X]Relapsing fever, unspecified |
187470009 | [X]Other viral infections of unspecified site |
187471008 | [X]Viral infection, unspecified |
187589007 | Respiratory syncytial virus as the cause of diseases classified to other chapters |
190781000000101 | Respiratory syncytial virus antigen assay |
195648002 | (Acute nasopharyngitis or rhinitis) or (common cold) |
195662009 | Acute viral pharyngitis |
195727009 | Acute respiratory syncytial virus bronchitis |
195736008 | Acute bronchiolitis with bronchospasm |
195739001 | Acute bronchiolitis caused by respiratory syncytial virus |
195741000 | Acute bronchiolitis NOS |
195881003 | Pneumonia caused by respiratory syncytial virus |
200151000000106 | Reflux cough |
204561000000109 | Respiratory syncytial virus nucleic acid detection |
20573003 | Ineffective breathing pattern |
206304007 | Perinatal hemoptysis of fetus and/or neonate |
206376005 | Sepsis of the newborn |
20670007 | Brassy cough |
206758001 | [D]Pyrexia of unknown origin |
206760004 | [D]Chills with fever |
206762007 | [D]Fever NOS |
206763002 | [D]Persistent fever |
206998007 | [D]Mouth breathing |
207066005 | [D]Cough |
207067001 | [D]Cough syncope |
207069003 | [D]Cough with hemorrhage |
207582004 | [X]Other and unspecified abnormalities of breathing |
209871000000104 | RSV nucleic acid detection |
209881000000102 | RSV nucleic acid detection |
221051000000108 | Respiratory syncytial virus prevention drugs Band 1 |
221061000000106 | Respiratory syncytial virus treatment and Hepatitis C treatment drugs Band 1 |
225575005 | Unable to cough up sputum |
225576006 | Able to cough up sputum |
225914005 | Bubbling respiration |
230361008 | Sepsis-associated encephalopathy |
232341009 | Acute rhinitis |
233602006 | Acute viral bronchiolitis |
233785003 | Infectious disorder of trachea |
233812001 | Sepsis-associated lung injury |
234173007 | Hyperdynamic septic shock |
234174001 | Hypodynamic septic shock |
238150007 | Sepsis syndrome |
238151006 | Sepsis-associated organ dysfunction |
238152004 | Sepsis-related gastrointestinal ulceration |
24612001 | Wheeze - rhonchi |
247410004 | Painful cough |
248425001 | Pyrexia |
248427009 | Fever symptoms |
248430002 | Pattern of fever |
248431003 | Phase of fever |
248432005 | Rising phase of fever |
248433000 | Plateau phase of fever |
248434006 | Falling phase of fever |
248435007 | Prolonged fever |
248436008 | Slightly remittent fever |
248443002 | Intermittent hepatic fever |
248444008 | Biphasic fever |
248445009 | Fever, diurnal variation |
248446005 | Reversed diurnal fever |
248449003 | Central fever |
248573009 | Noisy respiration |
248574003 | Croupy breathing |
248577005 | Rattling breathing |
248579008 | Whistling respiration |
248580006 | Whistling in nose |
248592006 | Character of cough |
248593001 | Cough when swallowing |
248615003 | Large airway sounds |
248616002 | Increased vocal resonance |
248617006 | Decreased vocal resonance |
248618001 | Moist crackles |
248619009 | Bubbling crackles |
248621004 | Transmitted sounds |
248622006 | Respiratory clicking sound |
248623001 | Respiratory squawk |
248624007 | Respiratory squeak |
263731006 | Coughing |
266089004 | Septicemia NOS |
266116004 | Viral infection NOS |
266377009 | (Acute nasopharyngitis) or (common cold) or (acute coryza) or (acute rhinitis) or (sniffles) or (snuffles) |
267034005 | Productive cough NOS |
268893004 | [D]Fever NEC |
268984004 | Examination of fever |
271621004 | Stertorous breathing |
271622006 | Death rattle |
271749004 | Acute rise of fever |
271750004 | Gradual rise of fever |
271751000 | Continuous fever |
271752007 | Staircase fever |
271753002 | Irregular fever |
271754008 | Rapid fall of fever |
271755009 | Gradual fall of fever |
271897009 | On examination - fever |
272039006 | Complaining of cough |
272040008 | Wheezing symptom |
273041000000105 | Respiratory syncytial virus treatment and Hepatitis C treatment drugs band 1 |
273051000000108 | Respiratory syncytial virus prevention drugs band 1 |
274308003 | On examination - hyperpyrexia |
274640006 | Fever with chills |
276741000 | Sepsis-associated myocardial dysfunction |
277357006 | Sputum retention |
277638005 | Sepsis-associated left ventricular failure |
277639002 | Sepsis-associated right ventricular failure |
281794004 | Viral upper respiratory tract infection |
284520004 | Basal crepitations |
284523002 | Persistent cough |
287121000000103 | Barking cough |
287131000000101 | Barking cough |
28743005 | Productive cough |
288849009 | Unable to breathe |
289097003 | Unable to take deep breaths |
289100008 | Difficulty taking deep breaths |
289102000 | Unable to control breathing |
289104004 | Does not control breathing |
289105003 | Difficulty controlling breathing |
289113002 | Able to cough |
289114008 | Does cough |
289115009 | Does not cough |
289116005 | Difficulty coughing |
289117001 | Able to expectorate |
289118006 | Unable to expectorate |
289120009 | Does not expectorate |
289121008 | Difficulty expectorating |
289965001 | Croupy cough |
297208002 | Expiratory grunting |
301235001 | Finding of cough |
301236000 | Effective cough |
301240009 | Difficulty to clear sputum |
301241008 | Unable to clear sputum |
301243006 | Does not clear sputum |
301244000 | Ability to cough up sputum |
301245004 | Difficulty in coughing up sputum |
301246003 | Does cough up sputum |
301247007 | Does not cough up sputum |
301282008 | Finding of respiration |
301287002 | Expiratory stridor |
301288007 | Quiet respiration |
301703002 | Expiratory polyphonic wheeze |
301708006 | Chest clear |
301826004 | Intermittent stridor |
304213008 | Low grade pyrexia |
306321000000105 | Green traffic light - low risk of serious illness (Feverish illness in children 2007) |
306331000000107 | Green traffic light - low risk of serious illness (Feverish illness in young children 2007) |
306341000000103 | Green traffic light - low risk of serious illness (Feverish illness in young children 2007) |
306779000 | Ability to cough voluntarily |
306780002 | Able to cough voluntarily |
306781003 | Unable to cough voluntarily |
306782005 | Difficulty coughing voluntarily |
307487006 | Biphasic stridor |
307631000000100 | Amber traffic light - intermediate risk of serious illness (Feverish illness in children 2007) |
307641000000109 | Amber traffic light - intermediate risk of serious illness (Feverish illness in children 2007) |
307651000000107 | Amber traffic light - intermediate risk of serious illness (Feverish illness in children 2007) |
307661000000105 | Red traffic light - high risk of serious illness (Feverish illness in children 2007) |
307671000000103 | Red traffic light - high risk of serious illness (Feverish illness in children 2007) |
307681000000101 | Red traffic light - high risk of serious illness (Feverish illness in children 2007) |
311000119101 | Non-allergic rhinitis |
312130009 | Viral infection by site |
312133006 | Viral respiratory infection |
312134000 | Viral lower respiratory infection |
31309002 | Respiratory syncytial virus pharyngitis |
313274005 | Respiratory syncytial virus swab |
314043005 | Viral pleurisy |
315184001 | Respiratory syncytial virus antigen level |
315246003 | Unexplained cough |
31572008 | Inspiratory wheezing |
31846006 | Medium rales |
320955005 | Cough suppressants |
32370002 | Diprophylline |
33778004 | Bronchovesicular breath sounds |
34014006 | Viral disease |
34050004 | Respiratory syncytial virus pneumonia |
34448000 | Serologic test for respiratory syncytial virus |
34770001 | Atelectatic rales |
34808003 | Breathing problem |
349991003 | Compound cough suppressant |
364054002 | Characteristic of cough |
365411000000103 | Respiratory syncytial virus A detected |
365421000000109 | Respiratory syncytial virus A detected |
365431000000106 | Respiratory syncytial virus A detected |
365441000000102 | Respiratory syncytial virus B detected |
365451000000104 | Respiratory syncytial virus B detected |
365461000000101 | Respiratory syncytial virus B detected |
365471000000108 | Respiratory syncytial virus untyped strain detected |
365481000000105 | Respiratory syncytial virus untyped strain detected |
365491000000107 | Respiratory syncytial virus untyped strain detected |
366946004 | Feverish cold |
366956000 | Cough with fever |
367171008 | Feverish cold |
367181007 | Cough with fever |
371044001 | Transient respiratory distress with sepsis |
373904004 | Feels hot/feverish |
373906002 | Fever with sweating |
386305005 | Treatment of fever |
386661006 | Fever |
386813002 | Abnormal breathing |
390757000 | Respiratory syncytial virus antigen assay |
396991000000105 | [D]Fever NOS |
398234006 | Breathing system problem |
400661000000104 | [X]Other specified septicaemia |
40428002 | High-pitched rhonchi |
408684006 | Healthcare associated respiratory syncytial virus disease |
408691009 | Pleuritic breathing |
409091000000109 | [X]Other and unspecified abnormalities of breathing |
409596002 | Non-productive cough |
409631000 | Acute viral disease |
409702008 | Hyperpyrexia |
4120002 | Bronchiolitis |
416088008 | Bovine respiratory syncytial virus disease |
416113008 | Febrile disorder |
417770000 | Human respiratory syncytial virus Group A |
417771001 | Human respiratory syncytial virus Group B |
417772008 | Human respiratory syncytial virus GA1 |
417773003 | Human respiratory syncytial virus GA2 |
417774009 | Human respiratory syncytial virus GA3 |
417790009 | Human respiratory syncytial virus GA4 |
417791008 | Human respiratory syncytial virus GA5 |
417792001 | Human respiratory syncytial virus GA6 |
417793006 | Human respiratory syncytial virus GA7 |
417794000 | Human respiratory syncytial virus GB1 |
417795004 | Human respiratory syncytial virus GB2 |
417796003 | Human respiratory syncytial virus GB3 |
417797007 | Human respiratory syncytial virus GB4 |
417850002 | Respiratory tract congestion and cough |
420079008 | Relapsing fever |
42136008 | Swinging fever |
425696007 | Manual respiratory assistance using bag and mask |
426000000 | Fever greater than 100.4 Fahrenheit |
426976009 | Pain provoked by breathing |
428869006 | Mixed rhinitis |
43025008 | Paroxysmal cough |
430546009 | Agonal respiration |
431231008 | Acute rhinosinusitis |
440929004 | Respiratory syncytial virus A present |
441048007 | Respiratory syncytial virus B present |
441278007 | Respiratory syncytial virus untyped strain present |
441551009 | Inflammation of larynx caused by virus |
441761000000105 | [X]Relapsing fever, unspecified |
444814009 | Viral sinusitis |
445241004 | Persistent cough after viral respiratory infection |
447931005 | Clinical sepsis |
46107006 | Relapsing fever |
464581000000103 | [X]Other viral infections of unspecified site |
464591000000101 | [X]Viral infection, unspecified |
465301000000100 | [D]Fever NEC |
465311000000103 | [X]Septicemia, unspecified |
468191000000103 | [D]Fever NEC |
468246003 | Aerosol face mask, rebreathing |
468414000 | Aerosol face mask, non-rebreathing |
47525004 | Coarse respiratory crackles |
47653008 | Harsh breath sounds |
48348007 | Normal breath sounds |
48409008 | Respiratory crackles |
495721000000108 | [D]Pyrexia of unknown origin |
495731000000105 | [D]Chills with fever |
495741000000101 | [D]Persistent fever |
49727002 | Cough |
497541000000102 | [D]Mouth breathing |
49779001 | Bovine respiratory syncytial virus |
498061000000106 | [D]Cough |
498071000000104 | [D]Cough syncope |
498091000000100 | [D]Cough with haemorrhage |
51191000237106 | Qualitative result of Respiratory syncytial virus antigen in nasal fluid |
51701000237100 | Qualitative result of human respiratory syncytial virus ribonucleic acid nucleic acid amplification |
53541006 | Low-pitched rhonchi |
536861000000102 | Cough symptom NOS |
53972003 | Added respiratory sounds |
54514007 | Bronchophony |
5505005 | Acute bronchiolitis |
55735004 | Respiratory syncytial virus infection |
56018004 | Wheezing |
57089007 | Respiratory syncytial virus bronchiolitis |
571041000000100 | On examination - fever - general NOS |
571051000000102 | On examination - level of fever NOS |
582151000000103 | On examination - fever NOS |
58596002 | Inspiratory stridor |
58840004 | Decreased breath sounds |
593251000000102 | Relapsing fever NOS |
598631000000100 | On examination - fever character NOS |
59921000237106 | Qualitative result of respiratory syncytial virus antigen in nasopharyngeal aspirate |
59994004 | Hacking cough |
60025004 | Transitory fever of newborn |
615621000000101 | Respiratory syncytial virus as the cause of diseases classified to other chapters |
621031000000103 | Acute bronchiolitis NOS |
62731002 | Increasing frequency of cough |
63000007 | Spasmodic cough |
63642005 | Superficial crackling rales |
63993003 | Remittent fever |
6415009 | Human respiratory syncytial virus |
65503000 | Absent breath sounds |
65526007 | Pleuropericardial friction rub |
65949001 | Increased breath sounds |
66011008 | Viral tracheitis |
66857006 | Hemoptysis |
677011000000103 | Productive cough NOS |
67750007 | Ineffective airway clearance |
68095009 | Wheezing stridor |
691041000000103 | Viral infection NOS |
70076002 | Rhinitis |
701331000000100 | Septicemia NOS |
70407001 | Stridor |
707779003 | Ribonucleic acid of Human respiratory syncytial virus A |
707780000 | Ribonucleic acid of Human respiratory syncytial virus B |
707781001 | Ribonucleic acid of Human respiratory syncytial virus |
709251003 | Antigen of Bovine respiratory syncytial virus |
70976000 | Viral epiglottitis |
7142008 | Cough at rest |
718004 | Acute bronchiolitis with obstruction |
72204002 | Respiratory syncytial virus laryngotracheobronchitis |
722892007 | Fever due to infection |
75125004 | Chills and fever |
7520000 | Pyrexia of unknown origin |
75252003 | Inspiratory crackles |
75483001 | Breathing painful |
755581000000101 | Mild wheeze |
755591000000104 | Moderate wheeze |
755601000000105 | Severe wheeze |
755611000000107 | Very severe wheeze |
76571007 | Septic shock |
767467006 | Respiratory syncytial virus immune globulin |
769210005 | Strength of cough |
769211009 | No cough strength |
770349000 | Sepsis caused by virus |
77047003 | Vesicular breathing |
773117009 | Laryngeal stridor |
773551000000105 | Fever care management |
77957000 | Intermittent fever |
781651000000101 | Respiratory bronchiolitis associated interstitial lung disease |
789043007 | Sepsis without septic shock |
79451004 | Bronchial breathing |
79479005 | Respiratory syncytial virus bronchitis |
807861000000106 | Respiratory bronchiolitis associated interstitial lung disease |
80954004 | Decreased respiratory function |
821021000000105 | Detection of respiratory syncytial virus ribonucleic acid by nucleic acid amplification test |
82272006 | Common cold |
82399006 | Audible inspiration |
831561000000109 | Sepsis |
832361000000107 | Sepsis |
832371000000100 | Sepsis |
8442000 | Purulent rhinitis |
85377008 | Post-tussive crackles |
859701000000104 | Suspected sepsis |
862231000000103 | Massive haemoptysis |
867311000000104 | Constant wheezing |
867411000000108 | Respiratory syncytial virus monoclonal antibody prophylaxis |
876251000000103 | Respiratory syncytial virus monoclonal antibody prophylaxis |
897656009 | Rhinosinusitis |
908401000000100 | Respiratory syncytial virus nucleic acid detection assay |
908411000000103 | RSV nucleic acid detection assay |
91302008 | Sepsis |
926181000000107 | Wheezing in absence of colds |
935211000000102 | Respiratory syncytial virus ribonucleic acid detection assay |
935221000000108 | Respiratory syncytial virus ribonucleic acid detection assay |
95618001 | Neonatal respiratory depression |
95627000 | Fever of newborn |
957421000000104 | Uncomplicated sepsis |
957431000000102 | Red flag sepsis |
9763007 | Expiratory wheezing |
Codes not in the full codelist are in faint grey.