Primary immunodeficiency disorder codes

Codelist metadata

Coding system

SNOMED CT

Coding system release

39.2.0

Organisation

NHSD Primary Care Domain Refsets

Codelist ID

nhsd-primary-care-domain-refsets/primary-immunodeficiency-disorder-codes

Version Tag

20241205

Version ID

3d832f15

Versions

About

Description

Taken from the PRIMIMMDEF_COD refset published by NHSD.


Codelists are developed by a broad community of users for individual study purposes, which may or may not meet the needs of other studies. They should not be thought of as universal definitions of a particular condition.

We don't offer any guarantees about what they do or don't identify. Users should carefully check that any codelist meets their needs, and seek clinical input where appropriate.

code term
1003381002 Onycho-tricho-dysplasia neutropenia syndrome
1050951000000106 Immunoglobulin G4 deficiency
111396008 Chédiak-Higashi syndrome
111584000 Reticular dysgenesis
111587007 Severe combined immunodeficiency due to absent interleukin-2 receptor
116133005 Congenital agammaglobulinemia
1162263002 Complement component 8 deficiency
1172892009 Autosomal recessive mendelian susceptibility to mycobacterial disease due to complete RAR related orphan receptor C receptor mutation
1172895006 Mendelian susceptibility to mycobacterial disease
1173999006 Interleukin 21 related infantile inflammatory bowel disease
1177173001 Congenital progressive bone marrow failure, B-cell immunodeficiency, skeletal dysplasia syndrome
1177175008 Skeletal dysplasia, T-cell immunodeficiency, developmental delay syndrome
1179284005 Severe combined immunodeficiency due to linker for activation of T cells deficiency
1179285006 Combined immunodeficiency due to moesin deficiency
1179286007 Combined immunodeficiency due to GINS complex subunit 1 deficiency
1179288008 Combined immunodeficiency due to transferrin receptor deficiency
1179300002 B-cell expansion with nuclear factor kappa light chain enhancer of activated B cells and T-cell anergy disease
1186654001 Immune dysregulation, inflammatory bowel disease, arthritis, recurrent infection, lymphopenia syndrome
1186712009 Combined immunodeficiency due to capping protein regulator and myosin 1 linker 2 deficiency
1186714005 Combined immunodeficiency due to interleukin-2 inducible T cell kinase deficiency
1186715006 Combined immunodeficiency due to CD70 deficiency
1186719000 Predisposition to invasive fungal disease due to caspase recruitment domain family member 9 deficiency
1186720006 CCAAT enhancer binding protein epsilon-associated autoinflammation, immunodeficiency, neutrophil dysfunction syndrome
1186725001 Warts, immunodeficiency, lymphedema, anogenital dysplasia syndrome
1187623009 Phosphoglucomutase 3-related congenital disorder of glycosylation
1197205005 Combined immunodeficiency due to dedicator of cytokinesis 8 deficiency
1197361002 Autoimmune lymphoproliferative syndrome due to cytotoxic T-lymphocyte associated protein 4 haploinsufficiency
1197366007 Autosomal recessive primary immunodeficiency with defective spontaneous natural killer cell cytotoxicity
1197415001 Susceptibility to infection due to tyrosine kinase 2 deficiency
1197428008 Combined immunodeficiency, enteropathy spectrum
1197477000 Combined immunodeficiency due to lipopolysaccharide-responsive beige-like anchor protein deficiency
1197478005 Primary immunodeficiency with multifaceted aberrant lymphoid immunity
1197479002 Dedicator of cytokinesis 2 deficiency
1197594000 Periodic fever, infantile enterocolitis, autoinflammatory syndrome
1209075008 Periodontitis due to congenital neutropenia
1222681008 Autoimmune hemolytic anemia, autoimmune thrombocytopenia, primary immunodeficiency syndrome
1229940001 Autosomal recessive T-cell negative, B-cell positive severe combined immunodeficiency due to interleukin 7 receptor deficiency
1229941002 Autosomal recessive T-cell negative, B-cell positive severe combined immunodeficiency due to protein tyrosine phosphatase receptor type C deficiency
1229942009 Severe combined immunodeficiency due to coronin 1A deficiency
1230295000 B-cell immunodeficiency, limb anomaly, urogenital malformation syndrome
1234831009 Myelodysplasia, infection, restriction of growth, adrenal hypoplasia, genital anomalies, enteropathy syndrome
124950009 Deficiency of immunoglobulin
1251449006 Ubiquitin specific peptidase 18 deficiency
12631000119106 Immunoglobulin G deficiency
1269234000 Predisposition to severe viral infection due to interferon regulatory factor 7 deficiency
1269277004 Leukocyte adhesion deficiency type 3
1279842008 Autosomal recessive mendelian susceptibility to mycobacterial disease due to partial janus kinase 1 deficiency
1279887007 Complement hyperactivation, angiopathic thrombosis, protein losing enteropathy syndrome
129643009 Chronic hypoplastic neutropenia
16894671000119102 Immunoglobulin G deficiency due to monoclonal gammopathy of undetermined significance
17182001 Agranulocytosis
190983003 Hypogammaglobulinaemia: [congenital] or [agammaglobulinaemia: (Bruton's) or (congenital sex-linked & [X-linked])]
190993005 Autosomal recessive severe combined immunodeficiency
190994004 (Severe combined immunodeficiency) or (Swiss type agammaglobulinaemia)
190996002 Severe combined immunodeficiency with reticular dysgenesis
190997006 Severe combined immunodeficiency with low T- and B-cell numbers
190998001 Severe combined immunodeficiency with low or normal B-cell numbers
191001007 Major histocompatibility complex class I deficiency
191002000 Major histocompatibility complex class II deficiency
191003005 Combined immunity deficiency NOS
191007006 Severe combined immunodeficiency with short-limbed dwarfism
191010004 Common variable immunodeficiency
191011000 Common variable immunodeficiency with predominant abnormalities of B-cell numbers and functions
191012007 Common variable immunodeficiency with predominant immunoregulatory T-cell disorders
191013002 Common variable immunodeficiency with autoantibodies to B- or T-cells
191030000 [X]Immunodeficiency associated with major defect, unspecified
191031001 [X]Other common variable immunodeficiencies
191347008 Cyclical neutropenia
191349006 Other specified agranulocytosis
191350006 Agranulocytosis NOS
191352003 Congenital dysphagocytosis
191355001 Polymorphonuclear neutrophil disorder NOS
192783000 Schultz disease
192801000000104 Schwachman's syndrome
203592006 X-linked severe combined immunodeficiency
21527007 Chronic granulomatous disease, type IV
22406001 Severe combined immunodeficiency due to absent lymphoid stem cells
23238000 Common variable agammaglobulinemia
234415003 Congenital agranulocytosis NEC
234416002 X-linked hypogammaglobulinemia
234430007 CR3-receptor deficiency
234433009 Myeloperoxidase deficiency
234533006 X-linked agammaglobulinemia with growth hormone deficiency
234534000 Autosomal agammaglobulinemia with absent B-cells
234539005 Immunoglobulin heavy chain deficiency
234542004 Selective immunoglobulin M and immunoglobulin A deficiency
234543009 Immunoglobulin light chain deficiency
234544003 Immunoglobulin subclass deficiency
234546001 Immunoglobulin G2 deficiency
234548000 Immunoglobulin G3 deficiency
234549008 Immunoglobulin G4 deficiency
234550008 Immunoglobulin G1 deficiency
234551007 Immunoglobulin A1 deficiency
234552000 Immunoglobulin A2 deficiency
234553005 Immunoglobulin-associated molecule deficiency
234555003 Defective immunoglobulin glycosylation
234556002 Specific antibody deficiency
234557006 Anti-polysaccharide antibody deficiency
234558001 Anti-Haemophilus influenzae type b capsular polysaccharide antibody deficiency
234559009 Anti-pneumococcal polysaccharide antibody deficiency
234560004 Anti-meningococcal polysaccharide A antibody deficiency
234561000 Anti-meningococcal polysaccharide C antibody deficiency
234562007 Anti-protein antibody deficiency
234563002 Anti-staphylococcal antibody deficiency
234564008 Primary immunoglobulin catabolism abnormality
234565009 Immunoglobulin hypercatabolism
234569003 X-linked severe combined immunodeficiency
234570002 Severe combined immunodeficiency with maternofetal engraftment
234571003 Warts, hypogammaglobulinemia, infections, and myelokathexis
234573000 Phagocytic cell defect
234577004 Lipochrome histiocytosis - familial
234578009 Defective phagocytic cell opsonization
234579001 Mannan-binding protein deficiency
234580003 Defective phagocytic cell chemotaxis
234581004 Defective phagocytic cell adhesion
234582006 Leukocyte adhesion deficiency - type 1
234583001 Leukocyte adhesion deficiency - type 2
234585008 Defective phagocytic cell killing
234586009 Leukocyte glucose-6-phosphate dehydrogenase deficiency
234587000 Neutrophil lactoferrin deficiency
234588005 Neutrophil secondary granule deficiency
234591005 Combined phagocytic defect
234593008 Classical complement pathway abnormality
234594002 Complement 1q deficiency
234595001 Complement 1q beta chain deficiency
234596000 Complement 1q dysfunction
234597009 Complement 1r deficiency
234598004 Complement 1s deficiency
234599007 Complement 2 deficiency
234600005 Complement 4 deficiency
234601009 Complement 4A deficiency
234602002 Complement 4B deficiency
234603007 Complement 3 deficiency
234604001 Alternative pathway deficiency
234605000 Factor B deficiency
234607008 Factor D deficiency
234608003 Terminal component deficiency
234609006 Complement 5 deficiency
234611002 Complement 6 deficiency
234612009 Complement 7 deficiency
234613004 Combined complement 6 and 7 deficiencies
234614005 Complement 8 beta chain deficiency
234615006 Complement 8 beta chain dysfunction
234616007 Complement 8 alpha-gamma deficiency
234617003 Complement 9 deficiency
234618008 Complement regulatory factor defect
234621005 Factor I deficiency
234623008 Complement 4 binding protein deficiency
234626000 Complement 5a inhibitor deficiency
234628004 Complement receptor deficiency
234629007 Complement receptor 1 deficiency
234630002 Complement receptor 3 deficiency
234631003 Immunodeficiency with major anomalies
234632005 Immunodeficiency associated with chromosomal abnormality
234633000 Centromeric instability of chromosomes 1,9 and 16 and immunodeficiency
234634006 Chromosome 18 syndromes and antibody deficiency
234635007 Chromosome 22 abnormalities with hypogammaglobulinemia
234636008 Monosomy 22 and absence of immunoglobulin A
234637004 Deletion of X-chromosome and hypogammaglobulinemia
234638009 Microcephaly, normal intelligence and immunodeficiency
234639001 Triple X syndrome, epilepsy, and hypogammaglobulinemia
234640004 18-p syndrome with associated immunodeficiency
234641000 Immunodeficiency associated with multiple organ system abnormalities
237618001 Insulin-dependent diabetes mellitus secretory diarrhea syndrome
24743004 Complement deficiency disease
24974008 Myelokathexis
25109007 Lymphopenic agammaglobulinemia - short-limbed dwarfism syndrome
254067002 Immuno-osseous dysplasia
26252007 Chronic granulomatous disease, type IIA
263661007 Complement 5 dysfunction
267538002 Agranulocytopenic disorder
29260007 Immunoglobulin A deficiency
29272001 Chronic granulomatous disease, type I
302874002 Phagocytic cell dysfunction
31323000 Severe combined immunodeficiency disease
33374000 Familial hemophagocytic lymphohistiocytosis
3439009 Severe combined immunodeficiency due to absent peripheral T cell maturation
350353007 De Vaal's syndrome
351287008 Reticular dysgenesis with congenital aleukocytosis
36070007 Wiskott-Aldrich syndrome
362993009 Autosomal recessive severe combined immunodeficiency disease
363265005 Predominant humoral immune deficiency
36980009 Severe combined immunodeficiency due to absent adenosine deaminase
37548006 Hypopigmentation-immunodeficiency disease
387759001 Chronic granulomatous disease
39674000 Familial C3B inhibitor deficiency syndrome
398250003 Familial hemophagocytic lymphohistiocytosis
40197009 Chronic granulomatous disease, type IA
403835002 X-linked hyper-immunoglobulin M syndrome
403836001 Autosomal recessive hyperimmunoglobulin M syndrome
403837005 Wiskott-Aldrich autosomal dominant variant syndrome
411421000000102 [X]Immunodeficiency associated with major defect, unspecified
411431000000100 [X]Other common variable immunodeficiencies
417167007 Immunoglobulin deficiency
41814009 Neutropenia with dysgranulopoiesis
442459007 Combined immunodeficiency disease
4434006 Bloom syndrome
449187006 Kappa light chain deficiency
44940001 Adenosine deaminase deficiency
449853003 Interleukin-12 deficiency
45390000 Severe combined immunodeficiency due to absent interleukin-2 production
467901000000107 [X]Immunodeficiency associated with major defect, unspecified
49555001 Severe combined immunodeficiency due to absent T cell receptor
55602000 Nezelof's syndrome
571321000000109 Other specified agranulocytosis
58606001 Primary immune deficiency disorder
626051000000103 Agranulocytosis NOS
646621000000103 Combined immunity deficiency NOS
656561000000105 Congenital agranulocytosis NEC
65880007 X-linked agammaglobulinemia
660661000000101 Polymorphonuclear neutrophil disorder NOS
68504005 Ataxia-telangiectasia syndrome
69295006 Cyclic neutropenia
699869003 Interleukin-1 receptor-associated kinase 4 deficiency
703149000 Periodontitis associated with cyclical neutropenia
703525006 Anhidrotic ectodermal dysplasia with immune deficiency
703538003 Mannose-binding lectin deficiency
709465004 Periodontitis co-occurrent with Chédiak-Higashi syndrome
709535007 Periodontitis co-occurrent with infantile genetic agranulocytosis
710927004 Periodontitis co-occurrent with cyclical neutropenia
711480000 Activated PI3K-delta syndrome
71436005 Periodic fever, immunodeficiency, thrombocytopenia syndrome
715982006 Severe combined immunodeficiency due to deoxyribonucleic acid cross-link repair protein 1c deficiency
716378008 Combined immunodeficiency due to Zeta-chain associated protein kinase 70 deficiency
716869006 Mendelian susceptibility to mycobacterial disease due to complete interleukin 12 receptor beta 1 deficiency
716871006 Severe combined immunodeficiency due to deoxyribonucleic acid dependent protein kinase catalytic subunit deficiency
717811007 Combined immunodeficiency due to calcium release activated calcium channel dysfunction
718107000 Severe combined immunodeficiency T-cell negative B-cell positive due to janus kinase-3 deficiency
718230004 Mendelian susceptibility to mycobacterial disease due to complete interferon gamma receptor 1 deficiency
718232007 Pyogenic bacterial infection due to deficiency of myeloid differentiation primary response 88
718717004 Primary immunodeficiency syndrome due to p14 deficiency
718882006 X-linked severe congenital neutropenia
71904008 Severe combined immunodeficiency due to absent class II human leukocyte antigens
719156006 X-linked intellectual disability with hypogammaglobulinemia and progressive neurological deterioration syndrome
719685004 Absent thumb with short stature and immunodeficiency syndrome
719814009 X-linked mendelian susceptibility to mycobacterial disease
719824001 Vici syndrome
719827008 X-linked immunoneurologic disorder
720345008 Severe T-cell immunodeficiency, congenital alopecia, nail dystrophy syndrome
720520009 Attenuated Chédiak-Higashi syndrome
720853005 Severe combined immunodeficiency, microcephaly, growth retardation, sensitivity to ionizing radiation syndrome
720986005 Anhidrotic ectodermal dysplasia, immunodeficiency, osteopetrosis, lymphedema syndrome
721876004 Mendelian susceptibility to mycobacterial disease due to complete interferon gamma receptor 2 deficiency
721877008 Mendelian susceptibility to mycobacterial disease due to complete interleukin 12 subunit beta deficiency
721903007 Microcephaly, hypogammaglobulinemia, abnormal immunity syndrome
721977007 Lung fibrosis, immunodeficiency, 46,XX gonadal dysgenesis syndrome
722067005 Severe combined immunodeficiency with hypereosinophilia
722281001 Agammaglobulinemia, microcephaly, craniosynostosis, severe dermatitis syndrome
722288007 Autoimmune enteropathy and endocrinopathy with susceptibility to chronic infection syndrome
722290008 Autoimmune lymphoproliferative syndrome with recurrent viral infection
723334006 Immunodeficiency due to mutation of FAS-associated protein with death domain gene
723384004 Mendelian susceptibility to mycobacterial disease due to complete interferon stimulated gene 15 deficiency
723385003 Mendelian susceptibility to mycobacterial disease due to partial interferon regulatory factor 8 deficiency
723386002 Mendelian susceptibility to mycobacterial disease due to partial signal transducer and activator of transcription 1 deficiency
723443003 Neutrophil immunodeficiency syndrome
723508002 RAS-associated autoimmune leukoproliferative disease
723995003 Schimke immuno-osseous dysplasia
724177005 Ligase 4 syndrome
724179008 Laron syndrome with immunodeficiency
724275005 Primary immunodeficiency with natural killer cell deficiency and adrenal insufficiency
724276006 X-linked immune dysregulation, polyendocrinopathy, enteropathy syndrome
724361001 Hepatic veno-occlusive disease with immunodeficiency syndrome
724641002 Primary hemophagocytic lymphohistiocytosis
725135004 Combined immunodeficiency due to CD3gamma deficiency
725136003 Immunodeficiency by defective expression of human leukocyte antigen class 1
725137007 Neutropenia, monocytopenia, deafness syndrome
725150008 Autosomal dominant mendelian susceptibility to mycobacterial disease due to partial interferon gamma receptor 1 deficiency
725151007 Autosomal dominant mendelian susceptibility to mycobacterial disease due to partial interferon gamma receptor 2 deficiency
725290000 Combined immunodeficiency due to partial recombination-activating gene 1 deficiency
725431001 Autosomal recessive mendelian susceptibility to mycobacterial disease due to partial interferon gamma receptor 1 deficiency
725432008 Autosomal recessive mendelian susceptibility to mycobacterial disease due to partial interferon gamma receptor 2 deficiency
76243000 Chronic granulomatous disease, type IVA
763623001 Severe combined immunodeficiency due to cytidine 5-prime triphosphate synthetase 1 deficiency
763668009 Lichtenstein syndrome
763713000 Idiopathic CD4 lymphocytopenia
764858009 Isolated agammaglobulinemia
765145001 T cell negative B cell positive severe combined immunodeficiency due to gamma chain deficiency
765188009 Severe combined immunodeficiency due to complete recombination-activating gene 1 and/or recombination-activating gene 2 deficiency
765327005 Congenital sideroblastic anemia, B-cell immunodeficiency, periodic fever, developmental delay syndrome
766705006 Immunodeficiency due to ficolin 3 deficiency
766879006 Combined immunodeficiency due to OX40 deficiency
766983005 Susceptibility to respiratory infection associated with CD8alpha chain mutation
767263007 22q11.2 deletion syndrome
768560008 Melanoma differentiation-associated gene 5 deficiency
770625006 Combined immunodeficiency with faciooculoskeletal anomalies syndrome
770687001 Vasculitis due to adenosine deaminase 2 deficiency
770785002 T-cell immunodeficiency due to ras homolog family member H deficiency
770942003 Kostmann syndrome
770947009 Autosomal dominant severe congenital neutropenia
771078002 Immunodeficiency due to mannan binding lectin serine peptidase 2 deficiency
77121009 X-linked lymphoproliferative syndrome
771333006 Immune dysregulation, inflammatory bowel disease, arthritis, recurrent infection syndrome
771443008 Complement component 3 deficiency
771479000 Combined immunodeficiency due to serine/threonine kinase 4 deficiency
771515001 Facial dysmorphism, immunodeficiency, livedo, short stature syndrome
771517009 Severe combined immunodeficiency due to caspase recruitment domain family member 11 deficiency
772126000 Poikiloderma with neutropenia
77330006 Chronic granulomatous disease, type II
773404000 Roifman syndrome
773488000 Combined immunodeficiency due to mucosa-associated lymphoid tissue lymphoma translocation gene 1 deficiency
77358003 Congenital leukocyte adherence deficiency
773646003 Phospholipase C gamma 2 associated antibody deficiency and immune dysregulation
773662009 Neonatal inflammatory skin and bowel disease
773664005 Deficiency in anterior pituitary function, variable immunodeficiency syndrome
773730002 Osteopetrosis hypogammaglobulinemia syndrome
774211005 Severe dermatitis, multiple allergies, metabolic wasting syndrome
775909002 Congenital neutropenia, myelofibrosis, nephromegaly syndrome
778023004 Syndromic multisystem autoimmune disease due to itchy E3 ubiquitin protein ligase deficiency
778024005 Monocytopenia with susceptibility to infections
778028008 Immunodeficiency due to CD25 deficiency
778045003 Susceptibility to viral and mycobacterial infection
782750002 T-cell receptor alpha-beta-positive T-cell deficiency
782751003 Severe combined immunodeficiency due to inhibitor of nuclear factor kappa B kinase subunit beta deficiency
782759001 X-linked dyserythropoietic anemia with abnormal platelets and neutropenia
783007005 Recurrent Neisseria infection due to factor D deficiency
783058007 Autosomal recessive severe congenital neutropenia due to glucose-6-phosphatase catalytic subunit 3 deficiency
783099001 Radiosensitivity, immunodeficiency, dysmorphic features, learning difficulties syndrome
783142006 Pancytopenia due to IKAROS family zinc finger 1 mutations
783199003 Autosomal recessive severe congenital neutropenia due to jagunal homolog 1 deficiency
783200000 Autosomal recessive severe congenital neutropenia due to C-X-C motif chemokine receptor 2 deficiency
783201001 Autosomal recessive severe congenital neutropenia due to colony stimulating factor 3 receptor deficiency
783205005 Alopecia antibody deficiency
783245001 Primary immunodeficiency with post-measles-mumps-rubella vaccine viral infection
783248004 Hyperimmunoglobulin M syndrome with susceptibility to opportunistic infection
783249007 Hyperimmunoglobulin M syndrome without susceptibility to opportunistic infection
783617001 Severe combined immunodeficiency due to lymphocyte-specific protein-tyrosine kinase deficiency
783621008 Immunodeficiency with factor I anomaly
783743009 Combined immunodeficiency with granulomatosis
784340000 Combined immunodeficiency due to interleukin 21 receptor deficiency
789777007 Short-limb skeletal dysplasia with severe combined immunodeficiency
7990002 Immunoglobulinemia with isolated somatotropin deficiency
81166004 Properdin deficiency disease
82286005 Hyperimmunoglobulin M syndrome
82317007 Chronic granulomatous disease, type III
829973009 Autoinflammatory syndrome with pyogenic bacterial infection and amylopectinosis
840472009 Deficiency of immunoglobulin A with immunoglobulin G subclass deficiency
89454001 Shwachman syndrome
89655007 Congenital neutropenia
938231000000103 Mannan-binding protein deficiency
987840791000119102 Adenosine deaminase 2 deficiency
9893005 Immunodeficiency with thymoma

Codes not in the full codelist are in faint grey.